RnoEX6038259 @ rn6
Exon Skipping
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128612381-128613613:-
Coord C1 exon
chr8:128613483-128613613
Coord A exon
chr8:128613060-128613270
Coord C2 exon
chr8:128612381-128612531
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACACATCTGGTCTTCCACAGTCT
3' ss Score
7.95
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TCGGAAGACTTCTTCACTCTCATTGAGTCCCATGAGGGAAAGCCCCTGAAGCTGATGGTTTATAACTCTGAATCCGACTCCTGCCGGGAGGTGACTGTGACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq A exon
TCTGGGGTGTGGTATTGGTTACGGGTACCTGCACCGGATCCCAACGCAGCCCTCCAGCCAGTACAAGAAGCCACCCAGTGCCTCATCACCTGGCACTCCAGCTAAGACCCCACAACCTAATGCCTTTCCTCTTGGTGCCCCACCACCTTGGCCCATCCCTCAGGACTCTTCTGGCCCAGAGCTGGGTTCCAGGCAGAGTGACTACATGGAG
Seq C2 exon
GCCTTACCACAGGTCCCTGGTGGCTTTATGGAGGAGCAGCTCCCTGGGCCTGGGAGTCCTGGCCATGGCACTGCTGACTATGGGGGATGCCTACATTCCATGGAGATCCCGCTTCAGCCTCCACCTCCAGTCCAGCGGGTCATGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047-'13-6,'13-5,14-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.775 C2=1.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=22.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACTTCTTCACTCTCATTGAGTC
R:
GGTCCATGACCCGCTGGA
Band lengths:
276-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]