DreEX6026878 @ danRer10
Exon Skipping
Gene
ENSDARG00000003068 | gorasp1
Description
golgi reassembly stacking protein 1 [Source:ZFIN;Acc:ZDB-GENE-030826-23]
Coordinates
chr2:24155812-24158107:+
Coord C1 exon
chr2:24155812-24155942
Coord A exon
chr2:24156052-24156193
Coord C2 exon
chr2:24158020-24158107
Length
142 bp
Sequences
Splice sites
3' ss Seq
TAATGTTTTTGCGTTTATAGTCT
3' ss Score
6.1
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
TCTGAGGATTTCTTCTCCCTAATTGAAGCCCATGAGGGGAAACCATTGAAGCTGCTGATTTACAATACGGAGACAGATAAATGCAGGGAGGTCATTGTTACACCAAATGGTGCCTGGGGGGGAGAAGGAAG
Seq A exon
TCTTGGCTGTGGTATTGGATATGGCTACCTGCACCGAATCCCAGCACAACCCGAAGGCCCAAAATCTGAAAAGGTCAGTTCAAGAGAGTCACCTGTGGCAGGGAACCCAGAGCAAGAATATCCAACAAATGGATTCTCAGAG
Seq C2 exon
GTGTCGCTGATGGCGTCTGGTCAGTCATTGAGTGGCATGGATCTTGAAACCCCACTGCCTCCTCCCATTCAGAGAGTCATGGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003068-'7-5,'7-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.633 C2=0.900
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGATTTCTTCTCCCTAATTGA
R:
AGGATCCATGACTCTCTGAATGGG
Band lengths:
218-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]