RnoALTD0012780-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128613060-128613613:-
Coord C1 exon
chr8:128613524-128613613
Coord A exon
chr8:128613483-128613523
Coord C2 exon
chr8:128613060-128613270
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ACACATCTGGTCTTCCACAGTCT
3' ss Score
7.95
Exon sequences
Seq C1 exon
TCGGAAGACTTCTTCACTCTCATTGAGTCCCATGAGGGAAAGCCCCTGAAGCTGATGGTTTATAACTCTGAATCCGACTCCTGCCGGGAG
Seq A exon
GTGACTGTGACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq C2 exon
TCTGGGGTGTGGTATTGGTTACGGGTACCTGCACCGGATCCCAACGCAGCCCTCCAGCCAGTACAAGAAGCCACCCAGTGCCTCATCACCTGGCACTCCAGCTAAGACCCCACAACCTAATGCCTTTCCTCTTGGTGCCCCACCACCTTGGCCCATCCCTCAGGACTCTTCTGGCCCAGAGCTGGGTTCCAGGCAGAGTGACTACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047-11-5,12-5,13-5-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.775
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=22.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGCCCCTGAAGCTGATG
R:
CTGGGTGGCTTCTTGTACTGG
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]