HsaALTD0007360-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71243829-71244470:-
Coord C1 exon
chrX:71244323-71244470
Coord A exon
NA
Coord C2 exon
chrX:71243829-71243980
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGATG
5' ss Score
1.53
3' ss Seq
TGCACAACATATCACTGCAGCCA
3' ss Score
3.71
Exon sequences
Seq C1 exon
GGTCAAAAGCGGCTGGTGCTTTCCGAAAGCTGCTCCCGGGACTCCATGAGCAGTCAGCCTAGTTGTACCGGGCTCAACTATTCATATGGTGTCAATGCTTGGAAGTGCTGGGTGCAGTCAAAATATGCCAATGGAGAAACCAGCAAGG
Seq A exon
NA
Seq C2 exon
CCAAACCCATGCGTATCAAAGAGGATATTCTCGCCTGCTCAGCTGCTGAGCTCAACTACGGTCTGGCCCAGTTTGTGAGAGAAATCACTCGGCCCAATGGTGAACGATATGAACCTGACAGTATCTACTATTTGTGTCTTGGCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-33-39,34-39-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTTGGAAGTGCTGGGTG
R:
GACCGTAGTTGAGCTCAGCAG
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development