MmuALTD0016330-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101409154-101409734:-
Coord C1 exon
chrX:101409633-101409734
Coord A exon
NA
Coord C2 exon
chrX:101409154-101409305
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TCTGCTGCATGCCACTACAGCCA
3' ss Score
3.71
Exon sequences
Seq C1 exon
TGAGCAGCCAGCCTAGTTGTACTGGTCTCAACTATTCATACGGTGTCAATGCTTGGAAATGCTGGGTACAGTCAAAATACGCCAATGGAGAGACCAGCAAAG
Seq A exon
NA
Seq C2 exon
CCAAACCCATGCGTATCAAGGAGGATATTCTCGCCTGTTCAGCTGCTGAGCTCAACTATGGTCTGGCCCAGTTCGTGAGAGAAATCACTCGGCCCAATGGTGAACGATATGAACCTGACAGTATCTACTACTTGTGTCTTGGCATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-46-49,47-49-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCTTGGAAATGCTGGGT
R:
GCAGCTGAACAGGCGAGAATA
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types