RnoALTD0034736-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71303595-71304158:-
Coord C1 exon
chrX:71304011-71304158
Coord A exon
NA
Coord C2 exon
chrX:71303595-71303746
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TCTACCACATGTCACTACAGCCA
3' ss Score
3.51
Exon sequences
Seq C1 exon
GGTCAAAAGAGGCTGATGCTTTCTGAAAGCTGTTCCAGAGACTCTCTGAGCAGCCAGCCTAGTTGTACTGGTCTCAACTATTCATATGGTGTCAATGCTTGGAAATGCTGGGTACAGTCAAAATATGCCAATGGAGAGACCAGCAAAG
Seq A exon
NA
Seq C2 exon
CCAAACCCATGCGTATCAAGGAGGATATTCTCGCCTGTTCAGCTGCTGAGCTCAACTATGGTCTGGCCCAGTTTGTGAGAGAAATTACTCGACCCAATGGTGAACGATATGAACCTGACAGTATCTACTACCTGTGTCTTGGTATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707-28-31,29-31-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCTTGGAAATGCTGGGT
R:
GCAGCTGAACAGGCGAGAATA
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]