Special

MmuALTD0016330-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98604493-98605073:-
Coord C1 exon
chrX:98604972-98605073
Coord A exon
NA
Coord C2 exon
chrX:98604493-98604644
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TCTGCTGCATGCCACTACAGCCA
3' ss Score
3.71
Exon sequences
Seq C1 exon
TGAGCAGCCAGCCTAGTTGTACTGGTCTCAACTATTCATACGGTGTCAATGCTTGGAAATGCTGGGTACAGTCAAAATACGCCAATGGAGAGACCAGCAAAG
Seq A exon
NA
Seq C2 exon
CCAAACCCATGCGTATCAAGGAGGATATTCTCGCCTGTTCAGCTGCTGAGCTCAACTATGGTCTGGCCCAGTTCGTGAGAGAAATCACTCGGCCCAATGGTGAACGATATGAACCTGACAGTATCTACTACTTGTGTCTTGGCATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-38-36,39-36-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.081 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000112497





     
                   









    
Main Skipping Isoform:
ENSMUSP00000068197





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000113049, ENSMUSP00000113225
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chrX:71244321-71244322 
LOW PSI
HsaALTD0007360-1/2
(ZMYM3)
Human
(hg19)
chrX:70464173-70464320 
LOW PSI
HsaALTD0007360-1/2
(ZMYM3)
Rat
(rn6)
chrX:71304011-71304158 
ALTERNATIVE
RnoALTD0034736-1/2
(Zmym3)
Cow
(bosTau6)
chrX:84699623-84699624 
Chicken
(galGal4)
chr4:2288109-2288110 
Chicken
(galGal3)
chr4:2297109-2297110 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCAATGCTTGGAAATGCTGGGT

				
R: 
GCAGCTGAACAGGCGAGAATA

				
Band lengths: 
103-124

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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