HsaALTD1000229-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000005001 | PRSS22
Description
protease, serine 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr16:2855574-2856253:-
Coord C1 exon
chr16:2856134-2856253
Coord A exon
NA
Coord C2 exon
chr16:2855574-2855851
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCTC
5' ss Score
-0.02
3' ss Seq
CCCCTTCCCTTTCCTTCCAGCAA
3' ss Score
11.17
Exon sequences
Seq C1 exon
TTCCCCCAGCCTGTGGGAAGCCCCAGCAGCTGAACCGGGTTGTGGGCGGCGAGGACAGCACTGACAGCGAGTGGCCCTGGATCGTGAGCATCCAGAAGAATGGGACCCACCACTGCGCAG
Seq A exon
NA
Seq C2 exon
CAACCTGAACAAACCATACCTGTTCTCTGTGCTGCTGGGGGCCTGGCAGCTGGGGAACCCTGGCTCTCGGTCCCAGAAGGTGGGTGTTGCCTGGGTGGAGCCCCACCCTGTGTATTCCTGGAAGGAAGGTGCCTGTGCAGACATTGCCCTGGTGCGTCTCGAGCGCTCCATACAGTTCTCAGAGCGGGTCCTGCCCATCTGCCTACCTGATGCCTCTATCCACCTCCCTCCAAACACCCACTGCTGGATCTCAGGCTGGGGGAGCATCCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001-7-7,8-7,9-7-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(1.0=2.4)
A:
NA
C2:
PF0008921=Trypsin=FE(39.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAATGGGACCCACCACT
R:
CCACCTTCTGGGACCGAGAG
Band lengths:
110-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains