HsaALTD1000229-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000005001 | PRSS22
Description
protease, serine 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr16:2855574-2856253:-
Coord C1 exon
chr16:2856134-2856253
Coord A exon
chr16:2856082-2856133
Coord C2 exon
chr16:2855574-2855851
Length
52 bp
Sequences
Splice sites
5' ss Seq
GGAGTATGT
5' ss Score
4.82
3' ss Seq
CCCCTTCCCTTTCCTTCCAGCAA
3' ss Score
11.17
Exon sequences
Seq C1 exon
TTCCCCCAGCCTGTGGGAAGCCCCAGCAGCTGAACCGGGTTGTGGGCGGCGAGGACAGCACTGACAGCGAGTGGCCCTGGATCGTGAGCATCCAGAAGAATGGGACCCACCACTGCGCAG
Seq A exon
GTTCTCTGCTCACCAGCCGCTGGGTGATCACTGCTGCCCACTGTTTCAAGGA
Seq C2 exon
CAACCTGAACAAACCATACCTGTTCTCTGTGCTGCTGGGGGCCTGGCAGCTGGGGAACCCTGGCTCTCGGTCCCAGAAGGTGGGTGTTGCCTGGGTGGAGCCCCACCCTGTGTATTCCTGGAAGGAAGGTGCCTGTGCAGACATTGCCCTGGTGCGTCTCGAGCGCTCCATACAGTTCTCAGAGCGGGTCCTGCCCATCTGCCTACCTGATGCCTCTATCCACCTCCCTCCAAACACCCACTGCTGGATCTCAGGCTGGGGGAGCATCCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001-7-7,8-7,9-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(1.0=2.4)
A:
NA
C2:
PF0008921=Trypsin=FE(39.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAATGGGACCCACCACTG
R:
TCCAGGAATACACAGGGTGGG
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains