HsaINT0132954 @ hg38
Intron Retention
Gene
ENSG00000005001 | PRSS22
Description
protease, serine 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr16:2855574-2856253:-
Coord C1 exon
chr16:2856082-2856253
Coord A exon
chr16:2855852-2856081
Coord C2 exon
chr16:2855574-2855851
Length
230 bp
Sequences
Splice sites
5' ss Seq
GGAGTATGT
5' ss Score
4.82
3' ss Seq
CCCCTTCCCTTTCCTTCCAGCAA
3' ss Score
11.17
Exon sequences
Seq C1 exon
TTCCCCCAGCCTGTGGGAAGCCCCAGCAGCTGAACCGGGTTGTGGGCGGCGAGGACAGCACTGACAGCGAGTGGCCCTGGATCGTGAGCATCCAGAAGAATGGGACCCACCACTGCGCAGGTTCTCTGCTCACCAGCCGCTGGGTGATCACTGCTGCCCACTGTTTCAAGGA
Seq A exon
GTATGTACAGCCGGCCTGGGGCACTTGATCTTCTAAGGCCCTGGGCTTTGTGCCCCAGGCCCTGGGCTCCCTTTACAGGCTCTGCTTCCGGGCCTCTGTTCAATCTTGGTGCCCCTCGATTCTACCTAGAAGCCTCTCCTGCCTTCAGGGGCCTTCACACCCATGCTGTTCCCCCAGGTACCTCCTCCCAGACCAGGCCTGGCTGATCCTCCCCTTCCCTTTCCTTCCAG
Seq C2 exon
CAACCTGAACAAACCATACCTGTTCTCTGTGCTGCTGGGGGCCTGGCAGCTGGGGAACCCTGGCTCTCGGTCCCAGAAGGTGGGTGTTGCCTGGGTGGAGCCCCACCCTGTGTATTCCTGGAAGGAAGGTGCCTGTGCAGACATTGCCCTGGTGCGTCTCGAGCGCTCCATACAGTTCTCAGAGCGGGTCCTGCCCATCTGCCTACCTGATGCCTCTATCCACCTCCCTCCAAACACCCACTGCTGGATCTCAGGCTGGGGGAGCATCCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001:ENST00000161006:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAATGGGACCCACCACT
R:
GGGAGGTGGATAGAGGCATCA
Band lengths:
307-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development