BtaINT0118722 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020582 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr25:2180293-2181188:+
Coord C1 exon
chr25:2180293-2180464
Coord A exon
chr25:2180465-2180910
Coord C2 exon
chr25:2180911-2181188
Length
446 bp
Sequences
Splice sites
5' ss Seq
GGAGTACGT
5' ss Score
5.17
3' ss Seq
CCCAACCCTCTTCCTTTTAGTAA
3' ss Score
7.14
Exon sequences
Seq C1 exon
GCCCCCCAGCCTGCGGGAAGCGCCTGCAGCTGAACCGGATCGTGGGAGGCGAGGACAGCTCGGACGCCGAGTGGCCCTGGGTTGTGAGCATCCGGAAGAACGGCACCCACCACTGCGCGGGCTCCCTGCTCACCAGCCGCTGGGTGCTCACGGCCGCCCACTGCTTCAAGGA
Seq A exon
GTACGTGCGCCCCGCCCGCCCCTCCACCCGGTTTCCCGGACCCCAGGCTGCCCACCCAGCCCCGGTTTCCAGGCCTCTGGCCGGTCTTGAGTCCCTCAGGAGAGCTCTGGCTTCCACCCAGAAGCCTCTTTTGCACGCAGTGTGTGTGTCCCCAGGCCTGTCTGGCTCTTTGTGATCCCATGGACTATAGCCTTCCAGGCTCCAATGTCCATGGGATTTCCCAGACAAGAATACTGGAGTGGGTAGCCATTCCCTTCTCCAGGGGTTCATCCTGACCCAGGGATCGAACCCCTATCTCCTGCATTGCAGACAGGTTTCTTTACCACTGAGCCACCAGGGAAGCCCCCCTTTTGTGCTCCAGGGGCCTTCATGTGCATGCCATTCCTCAGAAACCCTTCCCCAGGCCCTTCCTGGGCTGATGCCAACCCCAACCCTCTTCCTTTTAG
Seq C2 exon
TAATCTGGACAAACCAACCCAGTTCTCTGTGCTGCTGGGAGCCTGGCAGCTGGGGAACCCTGGCCCAAGGTCCCAGGAGGTGGGTATCGCCTGGGCACAGCCCCACCCTGTGTACTCCTGGAAGGAGGGCTCCCGCGCTGACATCGCCCTGGTGCGCCTGGAGCGCGCCATCCAGTTCTCTGAGCGCGTCCTGCCCATCTGCCTGCCCGACTCCACCGTCCAGCTCTCTCCGGACACCAACTGCTGGATTGCCGGCTGGGGGAGCGTCCACGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020582:ENSBTAT00000021967:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAGCATCCGGAAGAACG
R:
GCCGGCAATCCAGCAGTT
Band lengths:
347-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]