MmuINT0127427 @ mm9
Intron Retention
Gene
ENSMUSG00000045027 | Prss22
Description
protease, serine, 22 [Source:MGI Symbol;Acc:MGI:1918085]
Coordinates
chr17:24133209-24133804:-
Coord C1 exon
chr17:24133633-24133804
Coord A exon
chr17:24133487-24133632
Coord C2 exon
chr17:24133209-24133486
Length
146 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTTGTTCTCTCTCCTTCCAGCAA
3' ss Score
11.57
Exon sequences
Seq C1 exon
TGTCCCCAGACTGTGGGAAGCCTCAGCAGCTGAACCGGATTGTGGGAGGTGAGGACAGCATGGATGCCCAGTGGCCCTGGATTGTTAGCATCCTCAAGAATGGCTCCCACCACTGTGCAGGCTCCCTGCTCACCAACCGCTGGGTGGTCACAGCCGCGCACTGCTTTAAGAG
Seq A exon
GTATGTGGACTCAGGCTTGCTTTTGACTCTCCCAGGCCCAGGCTTTCTGCCTCAGTCTCTGGGCTGTCCAGGCCTCTATTCAGGGATCTGGACACCATTGTACTAGACACTTTCCATCTCTGACATCTTGTTCTCTCTCCTTCCAG
Seq C2 exon
CAATATGGACAAACCATCTCTGTTCTCAGTATTGTTGGGGGCCTGGAAGCTGGGGAGCCCAGGCCCAAGGTCCCAGAAAGTAGGCATTGCTTGGGTGCTGCCTCACCCCAGGTATTCTTGGAAGGAGGGAACCCATGCAGACATTGCCCTGGTGCGCCTGGAACACTCCATCCAGTTCTCTGAGCGGATCCTGCCCATCTGCCTACCTGACTCCTCTGTCCGTCTCCCTCCCAAGACCGACTGCTGGATTGCCGGCTGGGGAAGCATCCAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045027-Prss22:NM_133731:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTGGATTGTTAGCATCC
R:
CAATGTCTGCATGGGTTCCCT
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: