RnoINT0118690 @ rn6
Intron Retention
Gene
ENSRNOG00000039698 | Prss22
Description
serine protease 22 [Source:RGD Symbol;Acc:1310880]
Coordinates
chr10:13372922-13373517:-
Coord C1 exon
chr10:13373346-13373517
Coord A exon
chr10:13373200-13373345
Coord C2 exon
chr10:13372922-13373199
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CTCGTTCTTTCTCCTTCCAGCAA
3' ss Score
10.55
Exon sequences
Seq C1 exon
GGTCGCCAGATTGTGGGAAGCCGCAGCAGCTGAACAGGGTCGTGGGAGGTGAGGACAGCGCGGATGCCCAGTGGCCTTGGATCGTTAGTATCCTCAAGAACGGCTCCCACCACTGCGCAGGCTCCTTGCTCACCAACCGCTGGGTGGTCTCAGCCGCACACTGCTTTAGCAG
Seq A exon
GTACGGGGAATCGGGCTTGCCTTCGACTCTCTGGGACCCCGAGTTTCTGCCTCAGGCTCTGGGCTGCCCAGGCCTCTCTTCAGGGATCTTGACGCCCTTGGACCAGGCATTCTCCCTCTCTGACATCTCGTTCTTTCTCCTTCCAG
Seq C2 exon
CAATATGGACAAACCATCTCCGTACTCAGTATTGTTGGGGGCCTGGAAGCTAGGGAACCCAGGCCCAAGGTCTCAGAAAGTAGGCATTGCTTCGGTGCTGCCCCACCCCAGGTATTCTCGGAAGGAGGGGACCCATGCAGACATTGCCCTGGTGCGCCTGGAACGCCCCATCCAATTCTCTGAGCGGATCCTGCCCATCTGCCTACCTGACTCCTCTGTCCATCTCCCTCCCAACACCAACTGCTGGATTGCCGGCTGGGGAAGCATCCAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039698:ENSRNOT00000060888:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCGCACACTGCTTTAG
R:
GGAGGGAGATGGACAGAGGAG
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]