HsaALTD1008747-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000102317 | RBM3
Description
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
Coordinates
chrX:48576508-48577109:+
Coord C1 exon
chrX:48576508-48576538
Coord A exon
chrX:48576539-48576600
Coord C2 exon
chrX:48577026-48577109
Length
62 bp
Sequences
Splice sites
5' ss Seq
ATGGCAGGT
5' ss Score
0.85
3' ss Seq
GTGTTTTTTTTCCCCCCCAGAAA
3' ss Score
11.85
Exon sequences
Seq C1 exon
GTGGTGGGGACCAGGGCTATGGGAGTGGCAG
Seq A exon
GTATTATGACAGTCGACCTGGAGGGTATGGATATGGATATGGACGTTCCAGAGACTATAATG
Seq C2 exon
AAACCAGGGTGGTTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAAATGAGACATGCACATAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102317-16-10,18-10,19-10-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=NA C2=0.770
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAGGGCTATGGGAGTG
R:
TGTGCATGTCTCATTTCAGTTGT
Band lengths:
100-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains