MmuALTD0011654-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:8143247-8143751:-
Coord C1 exon
chrX:8143688-8143751
Coord A exon
chrX:8143662-8143687
Coord C2 exon
chrX:8143247-8143329
Length
26 bp
Sequences
Splice sites
5' ss Seq
GTGGCAGGT
5' ss Score
-0.53
3' ss Seq
ATATCGCTTTTTCCCAGAAGCCA
3' ss Score
0.6
Exon sequences
Seq C1 exon
GTGGTGGAGACCAGGGATATGGAAGTGGAAGATATGACAGTCGTCCTGGAGGATATGGATATGG
Seq A exon
GTATGGGCGGTCTAGAGACTACAGTG
Seq C2 exon
CCAGGGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAAATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167-14-8,15-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACAGTCGTCCTGGAGGA
R:
ACATTTTGTGTGCATGCCCCA
Band lengths:
113-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types