RnoALTD0025233-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005387 | Rbm3
Description
RNA binding motif protein 3 [Source:RGD Symbol;Acc:620145]
Coordinates
chrX:15100903-15101421:+
Coord C1 exon
chrX:15100903-15100966
Coord A exon
chrX:15100967-15100992
Coord C2 exon
chrX:15101345-15101421
Length
26 bp
Sequences
Splice sites
5' ss Seq
GTGGCAGGT
5' ss Score
-0.53
3' ss Seq
ACATCGCTTTTTCCCAGAAGCCA
3' ss Score
0.84
Exon sequences
Seq C1 exon
GTGGTGGAGACCAGGGATATGGAAGTGGAAGATACGACAGCCGACCTGGAGGCTATGGATATGG
Seq A exon
GTATGGGCGGTCTAGAGACTACAGTG
Seq C2 exon
CCAGGGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005387-16-7,17-7,18-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAGATACGACAGCCGA
R:
ATTGTGTGCATGCCCCATCTC
Band lengths:
118-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]