HsaALTD1017695-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000127603 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr1:39346977-39349627:+
Coord C1 exon
chr1:39346977-39347156
Coord A exon
chr1:39347157-39347210
Coord C2 exon
chr1:39349478-39349627
Length
54 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CCCCTTTGCATTTTAATTAGACC
3' ss Score
6.13
Exon sequences
Seq C1 exon
GATTTGAAACAGCCCATGGCTGAAAGGAAAGCTCAGCTGGATGCTCTTGCTTTTGATATTCAGTTCTTTATCTCAGAACATGCCCAGGACTTGTCCCCTCAGCAGAATCGACAGATGCTGAGGCTTCTGAATGAACTGCAGAGGTCCTTCCAGGACATTTTGGAACAGACTGCCGCTCAG
Seq A exon
GTGGATGCCTTGCAGGGCCATCTTCAACAAATGGAGCAGGAAGCCCTGGTGAAG
Seq C2 exon
ACCCTGCAGAAACAACAAAATACCTGTCACCAGCAACTGGAGGATCTTTGCAGTTGGGTAGGACAGGCAGAAAGAGCACTGGCAGGCCACCAAGGCAGAACCACCCAGCAGGATCTCTCTGCTTTGCAGAAGAACCAAAGTGACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127603-104-115,105-115-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.502
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(58.0=83.3)
A:
NA
C2:
PF0043516=Spectrin=PU(40.7=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGGAACAGACTGCCGCT
R:
GAGATCCTGCTGGGTGGTTCT
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains