MmuALTD0008073-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123138328-123141014:-
Coord C1 exon
chr4:123140787-123141014
Coord A exon
chr4:123140781-123140786
Coord C2 exon
chr4:123138328-123138477
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CTCCTCTGCATTTTAATTAGACT
3' ss Score
5.54
Exon sequences
Seq C1 exon
GATATGAAACAATCTATGGCTGAAAGGAAATCTCAGCTGGATGCCCTTGCTTTGGATATTCAGCTCTTTATATCTGAGCACCCACAGGATCTGTCTCTTCAGCAGAATCAGGAGATGCTGCAGTTTCTGAGTGAATTACAGAGGTCCTTCCAGGGCCTTGTGGAACACACTGCAGCTCAGAAAGATGTGGTGCAGGGCCATCTTCAGCAAGTCCAGCAAGAAGTTCAG
Seq A exon
GTCAAG
Seq C2 exon
ACTCTGCAGAAACAACAAGACACCTGCCATAAGAAGCTGGAGGATCTTTGCAACTGGGTGGGACAGGCAGAAAGAGCACTGGAGAGGCACCAGGGCGGAGCCTCTCGGCAAGAGCTCCCTGCTCTGCAGCAGAACCAAAGTGACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-51-52,52-52-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(40.7=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATCTTCAGCAAGTCCAG
R:
GTCCCACCCAGTTGCAAAGAT
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: