GgaALTD0001387-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5662936-5664711:+
Coord C1 exon
chr23:5662936-5663163
Coord A exon
chr23:5663164-5663169
Coord C2 exon
chr23:5664562-5664711
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGTG
5' ss Score
-0.49
3' ss Seq
CCCCTCTGCTCTGACCGCAGACG
3' ss Score
9.54
Exon sequences
Seq C1 exon
GAGCTGAGTGAGCCCCTTGCTGACACCAAGTCTCAGCTCGACACCACCGCCTTCGACATTCAGCTCCTTATCTCGGAGCACGCCCAGGACCTGAGCCCCCAGCAGAGCAGGCAGCTGCTGCGGCTGCTCAATGAGCTGCAGAAGGCTTTCCGGGAGCTGGCGGGGCGCGTGACGGCGCAGGTGGAGGTGCTGCAGGTCTGTCTCCAGCAAGCGGAGCAGACGGATCAG
Seq A exon
GTGAAG
Seq C2 exon
ACGCTGCAGGAGCAGCAGGCAGCCCGCGCACAGAACCTGGCCGAGCTCAGCTCCTGGCTGGCGGCCGCTGAGGACACGCTGGTGGAGCAGCAGCGAGCAGCCAGCCAAGGAGACCTGCCTGCCTTGCAGCAGAGGCAAAGCGACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-46-43,47-43-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.620
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043516=Spectrin=PU(40.2=90.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGCAGGTCTGTCTC
R:
CTGAGCTCGGCCAGGTTCT
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]