RnoALTD0017253-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141147113-141149896:-
Coord C1 exon
chr5:141149669-141149896
Coord A exon
chr5:141149663-141149668
Coord C2 exon
chr5:141147113-141147262
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TCCCTCTGCATTTCACATAGACT
3' ss Score
6.89
Exon sequences
Seq C1 exon
GATATGAAACAGTCTGTAGCCGAAAGGAAGTCTCAGCTGGATGCCCTGGCTTTGGATACTCAGCTCTTTATTTCTGAGCACCCACAGGGCTTGTCTCTTCAGCAGAATCAGCAAATGCTGCAGTTTCTGAGTGAATTACAGACGTCTTTCCAGGGCCTTGTGGAACACACTGCAGCTCAGAAGGATGTGGTGCAGGGCCATCTCCAGCAAGTCCAGCAAGAAGTTCAG
Seq A exon
GTCAAG
Seq C2 exon
ACTCTGCAGAAGCAACAAGACACGTGTCATAAGAAGCTGGAGGATCTCCGCAGCTGGGTCAGACAGGCAGAAAGGGCACTGGAGAGGCACCGGGGCAGGGCCTCTCAACAAGAGCTTTCTGCTCTGCAGCAGAACCAAAGTGACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-65-69,66-69-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAAGTCCAGCAAGAAGT
R:
CTTTCTGCCTGTCTGACCCAG
Band lengths:
99-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]