HsaALTD1042213-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450 family 2 subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr19:41122825-41128254:+
Coord C1 exon
chr19:41122825-41122905
Coord A exon
chr19:41122906-41122963
Coord C2 exon
chr19:41127901-41128254
Length
58 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCATCCTGCCACCCCTGCAGGGC
3' ss Score
9
Exon sequences
Seq C1 exon
AAGGAGGACCCACTGAGCCACTTCCACATGGATACCCTGCTGATGACCACACATAACCTGCTCTTTGGCGGCACCAAGACG
Seq A exon
GTGAGCACCACGCTGCACCACGCCTTCCTGGCACTCATGAAGTACCCAAAAGTTCAAG
Seq C2 exon
GGCGCCGTCTGTGCCTGGGAGAGTCGCTGGCGCGCATGGAGCTCTTTCTGTACCTCACCGCCATCCTGCAGAGCTTTTCGCTGCAGCCGCTGGGTGCGCCCGAGGACATCGACCTGACCCCACTCAGCTCAGGTCTTGGCAATTTGCCGCGGCCTTTCCAGCTGTGCCTGCGCCCGCGCTAACGCCCCGGCCCTTCCAGATTCGCCTGTGAGCGATGAGGCCCGCCCATGCGGGTTGCTACGTCCCCTTCTTGGTCCACAGTCTGCCCTCATCCCTCTGGCAGTCACGCTGTCTTCCCTGCATGCTGTGCCTGCCGCGTGCCCTTCCCCCATCCCTCCAATCTGTGCCCCGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446-9-16,10-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.8=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGCCACTTCCACATGG
R:
GCGGTGAGGTACAGAAAGAGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains