HsaINT1010497 @ hg38
Intron Retention
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450 family 2 subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr19:41125493-41128254:+
Coord C1 exon
chr19:41125493-41125634
Coord A exon
chr19:41125635-41127900
Coord C2 exon
chr19:41127901-41128254
Length
2266 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CCATCCTGCCACCCCTGCAGGGC
3' ss Score
9
Exon sequences
Seq C1 exon
GGCACCGATGTCATCACCCTCCTTAACACCGTCCACTACGACCCCAGCCAGTTCCTGACGCCCCAGGAGTTCAACCCCGAGCATTTTTTGGATGCCAATCAGTCCTTCAAGAAGAGTCCAGCCTTCATGCCCTTCTCAGCTG
Seq A exon
GTGAGGGCAGGAATCAGAGTCTTTCTGGCCCAATTTCTACCTACATTCCTCACCCTAATTCCACTTGCCAAATCCTCTCACTCCTTCCTTCCACCCATTCTCAGCTTTGGATGCACAGAGACATTCATTCCTCCTCTCAACTCTGCTCCTATAGGCAAGTAGTGACTAAAATCCTCGTGAAGCAAGGTGGGGAGGTTGATTAATAATTTAACTTGGGACTGGGCATGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAATATGGTGAAACCCTGTCTCTACTTAAAATACAAAAATTAGCTGGGTGTGGTGGTGGGCGCATGTAGTCCCCGCTACTCTGGAGGCTGAGACAGGAAAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCACCATTGTACAGAGAGAGACTCTGTCTCAAAAAAAATAATGATAATAATTTAACAGCCAGGGGCAGTTGCTCACACCTGTAATCCCAGCACTTTGGGAGATCTAGGCGGGCAGATTACCTGAAGTCAGGAGTTCAAGATTAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAATTAGCCAGGAATGGTGGCACATGTTTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCATGTCATTGCACTCCAGCCTGGGCAACAAGAACAAAACTCCATCTCAAAAAATGAATAAATAATAATTATAATAATTATTATTTAACTTGGGCCAGGCACATTGGCTCACACCTGTAATCCCATCACTTTGGGAGGCTGAGGCGGGAGGATCGCTTGAGGCCAGGAGTTCAAGACCAGCCTGGACAACATGGCAAGACCCTTTCTCTACTGAAAATGTTAAAATTACCTAGATGTGGTGTGGTGTGCATCTGTGGTCCCAGCTACTTGGGAGGCTGAGGTGGGATGATCACTTGAGCTCAGGAGTTTGAGGTTACAGTGAGTATGATCATGCCACTGCACTCCAGTCTGGGCAACAGAGCGAGATCCTTTCTCTAAAATAAAAAATACTGACTAGCCAAAAATAAAAAATATATAAAAATTTTAAAAGAAAAAAAAATTGAACTTGGGAGTGGTCATTGTTTACCTCTCCACTGGGTGGCGCAGTTGAGGTGGTTCTAGGGGTTTTTGTTTTGTTTGTTTGTTTTTTGGCTTTCCTCTTTACCCTGCTGAAAAACTCCCTCTTTACTCAGTGGCAGGAAAAGAAAAAACAAAAAACTGGCATAATAATAGGTAACTTACCATATTGCCTACTGTGCGTCAAGTGCTGCCTCTACAAGAGCCCAGCTAAGAGCTTATGTTTTCCTCTGGGAATGTGTGGCCCAGATTCCAGCAGGGTTTGCATCCCATCTGTCACCCCCTAGCTGTGTTGCCTTGGGTATGTTACTCCACTTCTCTGTGCCTCAATGTCCACATCTATAAAATGGAGATAATACTAAGGCCTGCCTCTTGGAGTTGTTAGAATTAATTGCGATGTAATGCTCAGAGTAATGCATGGCCCATGGTAAGCTACTTACAGCCTCACTGCTTTCCCTGTGTTTACCATTCACAGCAGCCTCATGAGGCACTATTACTATCCCTCCTTTTATTTTTCTTTCTGAGACAGGGTCTTGCTGTCACCCAGGCTAGAGGGCAGTGGCACGATCATGGCTCACTGCAGCCTTGATCTCCTGGGCTCAAGTGATCCCCTCGCCTCAGCCTCCCAAGCAGCTGGGACTGCAGGCATGTGCCACCTTGCACATTTTTAAAATTTTTTTTGTAGAGATGGGATCTTGCTGTGTTGCCCAGGCTGCTCTCAAACTCCTGGGCTCAAGGGATCCTCTTCCCTCGGCCTCCGAAAATGCTGGGATTACAGGCCTAAGCCAGCACGCCCAGCCTTCATATCCCCATTTTAAATATCCAGAACGTGTGGTTTGTCCAGGATCACAAAACTAGTAGTGACAGGGCCAGGATTCGAACCCAAGCAGCCCAGGTCATTCCACTCCACAGTTTAAAGCATCTTTCCCAGTTCTTTACATGGGTGAATCTGTGACGTCCCCAGCTGCTGTCTTCCTTTCCTCTTATGTTTTCCTCTGGGAATGTGGGGTTGCAGCCTCTAACCTCATCTTATCTCACCGCCGCTCCCCATCCTGCCACCCCTGCAG
Seq C2 exon
GGCGCCGTCTGTGCCTGGGAGAGTCGCTGGCGCGCATGGAGCTCTTTCTGTACCTCACCGCCATCCTGCAGAGCTTTTCGCTGCAGCCGCTGGGTGCGCCCGAGGACATCGACCTGACCCCACTCAGCTCAGGTCTTGGCAATTTGCCGCGGCCTTTCCAGCTGTGCCTGCGCCCGCGCTAACGCCCCGGCCCTTCCAGATTCGCCTGTGAGCGATGAGGCCCGCCCATGCGGGTTGCTACGTCCCCTTCTTGGTCCACAGTCTGCCCTCATCCCTCTGGCAGTCACGCTGTCTTCCCTGCATGCTGTGCCTGCCGCGTGCCCTTCCCCCATCCCTCCAATCTGTGCCCCGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446:ENST00000331105:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(43.9=45.9)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains