HsaINT1010496 @ hg38
Intron Retention
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450 family 2 subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr19:41124719-41125634:+
Coord C1 exon
chr19:41124719-41124906
Coord A exon
chr19:41124907-41125492
Coord C2 exon
chr19:41125493-41125634
Length
586 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
CCACCTCCTCACCCACACAGGGC
3' ss Score
7.89
Exon sequences
Seq C1 exon
CCCGCGTGCAGGAGGAGATCGACCTCGTGGTGGGACGCGCGCGGCTGCCGGCGCTGAAGGACCGCGCGGCCATGCCTTACACAGACGCGGTGATCCACGAGGTGCAGCGCTTTGCAGACATCATCCCCATGAACTTGCCGCACCGCGTCACTAGGGACACGGCCTTTCGCGGCTTCCTGATACCCAAG
Seq A exon
GTGCGCTAGGCCTGGCAAACGACATCAGGCAACCTAAGAGGAGGCATCGCAGGCTCTTGCACTGGCAAGGAGTATCCCAGGCACTAGCCATGAACACCCCAGGCCTTAGCAACTGGCATCCCAAGCCCTAGCTACAGACATCTCAGACCCTTAAATCCAGAAGCTCAGGCCTTTGCCAGGACCCCATCTCATATCATAGTGGACTAGACCCCTTCACCATGACAAATCCCCTTCCTAGAACCCCTCCCTGGAAGCCCTGGGGTCTGGAACTTCATCTGGAGGATCCCCTGGGCCTAAACGCTATTCTCAGGGACCCCTCCTTTTCCCCAGAAACCCCACATCTGTTCCCACAAAGGTTGGGGGTTTCCCACATCCCTGCCAAAGTCCCCAATAATACAGCATATAGCACCCATCACTTGGAACCCTAGACACCCACACATATTTCCTTGGCCCCCGATTGAGTCCTATACCCACCTATACCCACCCCTTATCAAGTCCCCAGGACACCCAGCCCAATACAATGGAAAGGAGTTTGGGAGCCTCCCAGCCCTCCTACACTGCTAAGTCCACCTCCTCACCCACACAG
Seq C2 exon
GGCACCGATGTCATCACCCTCCTTAACACCGTCCACTACGACCCCAGCCAGTTCCTGACGCCCCAGGAGTTCAACCCCGAGCATTTTTTGGATGCCAATCAGTCCTTCAAGAAGAGTCCAGCCTTCATGCCCTTCTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446:ENST00000331105:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=PD(43.9=45.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCAGGAGGAGATCGACC
R:
CAGCTGAGAAGGGCATGAAGG
Band lengths:
326-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains