RnoINT0044376 @ rn6
Intron Retention
Gene
ENSRNOG00000032805 | Cyp2f4
Description
cytochrome P450, family 2, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:2476]
Coordinates
chr1:83944572-83946352:+
Coord C1 exon
chr1:83944572-83944759
Coord A exon
chr1:83944760-83946210
Coord C2 exon
chr1:83946211-83946352
Length
1451 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
ATGTCTCTTCGCCCACACAGGGC
3' ss Score
9.13
Exon sequences
Seq C1 exon
CCCGTGTGCAGGAAGAGATTGATTGTGTGGTGGGACGTTCGCGGATGCCCACGCTGGAGGACCGTGCATCCATGCCTTACACAGACGCGGTGATCCACGAAGTGCAGCGCTTTGCAGACGTCATCCCCATGAACCTGCCCCACCGCGTCATTCGGGACACACCTTTCAGGGGCTTCCTGATACCCAAG
Seq A exon
GTGTGCTGGGCTCCTGAAAGGACATGGGGGTAACCTAGGATAAGTATCTCAGACTTTTGTAATTGGCTAAGGGGTATCCTTAGACCCTAGCAATCAGCTCCTAGAGTGCCAAGCTGCAGAGGTGGGAAGTTTGCAAACATTTTTTTTCAAGTCTTAATTTTATTTTTTACATATATGGTGTTTCACCTAAATGTCTGTGTACCATATGTATGCAGAACCCTAGGAAGCCAAAAGAGGGCGCTGTGGCCTCTGGAACTGAAGTAACAGATGGTTGGGAGGCACCAAGAGGGTACTGGGAATCAAACCCAGGTTCTCTACAAGAGCAGCCAGTGCCCTTAACACCTGAGCACCTGAGCCATCTCTCCAGCGTTTGTTGTTGTTGTTTGTTTTTTGGTGAAGAAGTCTCTTTTTTTTTTAAATGATTTTATTTACTTAATGAATATGAGTACACTGTTGCTGTCTTCAGACACACCAGATCCCATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCTATCTCTCCAGCCCAAGAAGTCTCTTGTAGCTCAGGTTGGCCTTGAATTCCCTATGTGACTGAGGCTGGATTTGAACTCCTGATCCTCCTGCCTCCTCCTCCACTGTATTGGAATTCTACCACCCCTGGCTTAGCCATCTTAGATTCTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGCCATCTTAGATTCTTAAAAACAGAGTTCCTTCATACCGGAAGGGATTGGAACTCCATACAGCTTCCTAGCTCAAGCCCCTTCCTTGGACCCCTCTCCAGAATTACTGGGGTCTGGAATTTTATCTGAACATCTCCTGAGGCCAAAACACCATTCTTGGAGGACACCTTCTCCAAAAACAACCCCCCTACTTCCCACCCCACTTTGCACCCCGTGCACCTCCACTGAGAACTTCTACAAAGCCCGGGGCCAAGGGTGGCCCCCGTCCATTTCTCATCACTAGGAGATGTAGCTGGAGTCCTACCTTGTCAAATCCATAGTGCTTTGCTCAATCTTTGCAGCACAGAAACCTGAGTTTTGGGGGGAGGGAGGGAATCAAACAAGCAAGTATCCACATAGCAATTCACAACCACCAGTTCCAGGAAACCTGCCTCCGTCTTCTGACAACCGTGCGCGCACGCGGCGCGCACACACACACACACACACACACATACACACACACACACACACACACACACACACACACGTGTAGACAGACACTCATACACATAAAATGTTGTTAATCCTCGGTGAGTGTACATCACTGAATGTCTCTTCGCCCACACAG
Seq C2 exon
GGCACAGATGTCATCACGCTCCTTAACACCGTGCACTATGACTCCGACCAATTCAAGACCCCTCAGGAGTTCAATCCTGAGCATTTTCTGGATGCCAATCAATCCTTCAAGAAGAGCCCCGCCTTCATGCCATTTTCGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032805:ENSRNOT00000068690:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGTGCAGGAAGAGATTG
R:
CCGAAAATGGCATGAAGGC
Band lengths:
327-1778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]