HsaALTD1053792-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:HGNC:20811]
Coordinates
chr19:12034828-12035647:-
Coord C1 exon
chr19:12035547-12035647
Coord A exon
chr19:12035537-12035546
Coord C2 exon
chr19:12034828-12034874
Length
10 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ACTGTTTTTATTCATTTCAGGGA
3' ss Score
10.17
Exon sequences
Seq C1 exon
TTGGGAGCCTGGCTTTCCCCTCCGAGAGGGTTCAGGTGCCTCTGCCATAGCTTCTGTCGCCTGTGCTGTGACCCGCACTGGTCGTGGGAGTCACCTGAAAG
Seq A exon
GCAAGAAATG
Seq C2 exon
GGAGACAGGAATTGCAGGGAGAATCATGCATCAATGCCTGGAAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGGTGCCTCTGCCATAG
R:
CTCCCTGCAATTCCTGTCTCC
Band lengths:
93-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains