HsaEX6093123 @ hg38
Exon Skipping
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:HGNC:20811]
Coordinates
chr19:12018166-12035688:-
Coord C1 exon
chr19:12035537-12035688
Coord A exon
chr19:12021930-12022189
Coord C2 exon
chr19:12018166-12018292
Length
260 bp
Sequences
Splice sites
3' ss Seq
CGCTATTGTTTGTGGTTTAGGAA
3' ss Score
7.9
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CCTGCTCTCCTCGGTTCCCGGCTCCAGGCGGCGAGCTGAGGTTGGGAGCCTGGCTTTCCCCTCCGAGAGGGTTCAGGTGCCTCTGCCATAGCTTCTGTCGCCTGTGCTGTGACCCGCACTGGTCGTGGGAGTCACCTGAAAGGCAAGAAATG
Seq A exon
GAACACCTTTAAGTGGTTTTCTACCCTGGGTGGGCCAGGTGTTCCCTGCCTTCATTCCGGTAAACCAACAGTCTTCATTGTGGGTGTCATGGCCATCACGAACATGTCACAGTGCTGCAGAGATTTTGTTTATGGCCAGTTTTGGAGCCAGTTTATGGCCAGATTTGGGGGCCTGTTCCCAACACCTAAGTCTCTATCACAGCGTGACGGTTGAATTGGCAGCCAGTACCGCCAGGCATCCTGCATCATCACTGCAGGAG
Seq C2 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTGACCTTCACCCAAGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAAAATCTCTGTAGAGATGTGATGCAAGAAACCTTCAGGAACCTGGCCTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647_MULTIEX1-4/6=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=89.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCTCCTCGGTTCCC
R:
TAGAGGCCAGGTTCCTGAAGG
Band lengths:
276-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains