HsaINT1047461 @ hg38
Intron Retention
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:HGNC:20811]
Coordinates
chr19:12034828-12035688:-
Coord C1 exon
chr19:12035537-12035688
Coord A exon
chr19:12034875-12035536
Coord C2 exon
chr19:12034828-12034874
Length
662 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ACTGTTTTTATTCATTTCAGGGA
3' ss Score
10.17
Exon sequences
Seq C1 exon
CCTGCTCTCCTCGGTTCCCGGCTCCAGGCGGCGAGCTGAGGTTGGGAGCCTGGCTTTCCCCTCCGAGAGGGTTCAGGTGCCTCTGCCATAGCTTCTGTCGCCTGTGCTGTGACCCGCACTGGTCGTGGGAGTCACCTGAAAGGCAAGAAATG
Seq A exon
GTGAGCGTGCGGGCCAGGGGTCCCGAGGCGGGGGAGGAGCTGGTTGGAACCGGCCGGAACCGGCTGTGGTGGGACCCGGGCCTCCCCGCGGCGACTCCGGGGTCTGGGACCCGATTTCCCGTGGGACAGCTCGGCCCTTGGTCCCCTTGGCCCCACAGTGGGGCTGGGCCGGCCGCCGGGACCCGGGCGTCTCGTCCTGTCCCTGCGCGGTGACTGTCACCCAGTTCCCAGAGCCCTCTCTGGGCAGCTCCGCGCCCGCTGCCCCGCGTCTCCCCACATTGTGCGGGGACTACGCGAGGGTCATGGGGGGATCCCGCCTCGGGTGTGGGGGTTTGTGTAGGAGGAGGGTGGGCTGTGGGGTCCCCAGTAGCGCCTTTCTCCTCTTAAAAATTAAACTGAGACACGTTAACAATTATAGTTTTGCTTCTCAGAATAGGTTTTAAAAAATATATTAATAATTAGAGTTCCTTTGAGATTCCTGAATGATAAACACCCAGTCCTGGCTTGTAATTTGTTAACGGAAAATGCCAAGCTGTGTAAAATAACTTAAAGAAGTTTATTCAGAGCCGAATAGGAGAGGCCTCAGCTGAGGAAAACACAACCCCAGGAGGCCTGAAGTAAGTGGTCCCGAGGCGGCTCAAGACTGTTTTTATTCATTTCAG
Seq C2 exon
GGAGACAGGAATTGCAGGGAGAATCATGCATCAATGCCTGGAAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647:ENST00000419886:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCTCCTCGGTTCCC
R:
TGATGCATGATTCTCCCTGCA
Band lengths:
185-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains