HsaEX0073669 @ hg38
Exon Skipping
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:HGNC:20811]
Coordinates
chr19:12014732-12035688:-
Coord C1 exon
chr19:12035537-12035688
Coord A exon
chr19:12018166-12018292
Coord C2 exon
chr19:12014732-12016666
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATACATGTGAGATGTTTCAGGAT
3' ss Score
0.18
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CCTGCTCTCCTCGGTTCCCGGCTCCAGGCGGCGAGCTGAGGTTGGGAGCCTGGCTTTCCCCTCCGAGAGGGTTCAGGTGCCTCTGCCATAGCTTCTGTCGCCTGTGCTGTGACCCGCACTGGTCGTGGGAGTCACCTGAAAGGCAAGAAATG
Seq A exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTGACCTTCACCCAAGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAAAATCTCTGTAGAGATGTGATGCAAGAAACCTTCAGGAACCTGGCCTCTATAG
Seq C2 exon
AATTGTGGGAGAGAGACTCTTTGAAAGTAAAGAAGGTCATCAGCATGGAGAAATTTTGACCCAGGTTCCAGATGACATGCTGAAGAAAACAACTACTGGAGTAAAATCATGCGAAAGCAGTGTGTATGGAGAAGTAGGCAGTGCTCATTCATCTCTTAATAGGCACATCAGAGATGACACTGGACACAAGGCATATGAGTATCAAGAATATGGACAGAAACCATATAAATGTAAATACTGTAAAAAACCTTTCAACTGTCTCTCCTCTGTTCAGACACATGAAAGGGCTCATAGTGGAAGGAAACTCTATGTTTGTGAGGAATGCGGAAAAACATTTATTTCCCATTCAAACCTTCAAAGACACAGGATAATGCACCGTGGAGATGGACCTTATAAGTGTAAATTTTGTGGGAAAGCCTTGATGTTTCTCAGTTTGTATCTTATCCACAAACGAACTCACACTGGAGAGAAACCATATCAATGTAAACAGTGTGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647_MULTIEX1-5/6=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.002 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAGCTTCTGTCGCCTGTG
R:
CCAGTGTCATCTCTGATGTGCC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development