HsaEX0000279 @ hg19
Exon Skipping
Gene
ENSG00000154265 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:35]
Coordinates
chr17:67257776-67266891:-
Coord C1 exon
chr17:67266754-67266891
Coord A exon
chr17:67260876-67261046
Coord C2 exon
chr17:67257776-67257889
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCATTTTTTTTAGATC
3' ss Score
11.35
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GACTATGTTTTTGCAGCTGTTTTCAACAGTACTATGGTTTATTCTTTACCTATATTAGTGAATATCATTAGTAACTACTATCTTTATCATTTAAATGTGACTGAAACCATCCAGATCTGGAGTACCCCATTCTTTCAA
Seq A exon
ATCAAAGCTTATACTCAACTTAAACTTTCAGGTCTTTTGCCATCTGCATATTGGATTGGACAAGCTGTTGTTGATATCCCCTTATTTTTTATCATTCTTATTTTGATGCTAGGAAGCTTATTGGCATTTCATTATGGATTATATTTTTATACTGTAAAGTTCCTTGCTGTG
Seq C2 exon
GTTTTTTGCCTTATTGGTTATGTTCCATCAGTTATTCTGTTCACTTATATTGCTTCTTTCACCTTTAAGAAAATTTTAAATACCAAAGAATTTTGGTCATTTATCTATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.3=100)
A:
PF126982=ABC2_membrane_3=FE(29.3=100),PF128222=DUF3816=PU(26.0=78.9)
C2:
PF126982=ABC2_membrane_3=FE(19.4=100),PF128222=DUF3816=FE(21.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTATGTTTTTGCAGCTGTTTTCA
R:
AGGTGAAAGAAGCAATATAAGTGAAC
Band lengths:
202-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)