RnoEX6050360 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98596241-98600435:-
Coord C1 exon
chr10:98600322-98600435
Coord A exon
chr10:98598026-98598196
Coord C2 exon
chr10:98596241-98596354
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTTCTTTTTTTAGATC
3' ss Score
12.17
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATTACTGACATTGTTTTTAAAGTTGAGCTATATTTTCAAGCAGCTTTGCTTGGAATCATTGTTACTGCAATGCCACCTTACTTTGCCATGGAAAATGCAGAGAATCATAAG
Seq A exon
ATCAAAGCTTACACTCAGCTTAAACTTTCAGGTCTTTTGCCATCCGCCTACTGGATTGGACAGGCTGTGGTGGACATTCCCCTGTTTTTTGTTGTTCTGACTTTGATGCTGGGAAGTTTATTTGCCTTTCATCACGGACTGTATTTTTATCCTGTAAAGTTTCTTGCTGTG
Seq C2 exon
GTTTTTTGCCTCATTGCTTATGTGCCCTCGGTTATTCTGTTCACTTATATAGCTTCGTTCACCTTTAAGAAAATTTTAAATACCAAGGAATTTTGGTCATTTATCTATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'29-35,'29-33,30-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.1=100)
A:
PF126982=ABC2_membrane_3=FE(15.3=100)
C2:
PF126982=ABC2_membrane_3=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGACATTGTTTTTAAAGTTGAGC
R:
AAAATTTTCTTAAAGGTGAACGAAGC
Band lengths:
186-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]