BtaEX6091090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61908721-61911513:+
Coord C1 exon
chr19:61908721-61908834
Coord A exon
chr19:61910244-61910414
Coord C2 exon
chr19:61911400-61911513
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTTTTTTTTTAGATC
3' ss Score
13.09
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATCACAGACATCGTTTTCAAAATCGAGCTGTACTTCCAAGCAGCTTTACTTGGGGTTATTGTTACCGCAATGCCTCCTTACTTCGCCATGGAAAATGCAGAGAATCACAAG
Seq A exon
ATCAAAGCTTATACTCAGCTTAAGCTCTCAGGTCTCCTGCCTTCTGCATATTGGCTCGGACAGGCTATTGTTGACATCCCCTTATTTTTTGTGGTCCTTACTTTGATGATAGCCAGTTTGTTTGCATTTCATTATGGATTATATTTTTATGCTGTCAAGTTCCTTTCTGTG
Seq C2 exon
GTTTTTTGCCTTATCGGTTATGTTCCATCCGTTGTTCTGTTTACCTACATTACGTCTTTCACCTTTAAAAAAATTGCAAATACCAAAGAATTTTGGTCATTTATCTATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.1=100)
A:
PF126982=ABC2_membrane_3=FE(15.3=100)
C2:
PF126982=ABC2_membrane_3=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACAGACATCGTTTTCAAAATCG
R:
AAAGGTGAAAGACGTAATGTAGGT
Band lengths:
178-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]