MmuEX6090917 @ mm10
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110288063-110292199:-
Coord C1 exon
chr11:110292086-110292199
Coord A exon
chr11:110289791-110289961
Coord C2 exon
chr11:110288063-110288176
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTTTCCTTTTTAGATC
3' ss Score
13.18
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATTACTGACATTGTTTTTAAAATTGAGCTATATTTTCAAGCAGCTTTGCTTGGAATCATTGTTACTGCAATGCCACCTTACTTTGCCATGGAAAATGCAGAGAATCATAAG
Seq A exon
ATCAAAGCTTATACTCAACTTAAACTTTCGGGTCTTTTGCCATCAGCCTATTGGGTTGGACAAGCTGTTGTGGATATTCCCTTGTTTTTTGTTGTTCTGATTTTGATGCTGGGAAGTTTATTTGCATTTCATCATGGACTGTATTTTTATCCTGCAAAATTTCTTGCTGTG
Seq C2 exon
GTGTTTTGCCTCATTGCTTATGTGCCCTCCGTCATTCTGTTCACGTACATAGCTTCGTTCACTTTCAAGAAAATTTTAAATACCAAGGAATTTTGGTCATTTATCTATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'35-36,'35-34,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.1=100)
A:
PF126982=ABC2_membrane_3=FE(15.3=100)
C2:
PF126982=ABC2_membrane_3=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACATTGTTTTTAAAATTGAGCT
R:
TCTTGAAAGTGAACGAAGCTATGT
Band lengths:
178-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types