HsaEX0000931 @ hg19
Exon Skipping
Gene
ENSG00000204334 | AC007405.7
Description
Uncharacterized protein LOC285141 [Source:UniProtKB/Swiss-Prot;Acc:A1L162]
Coordinates
chr2:171634154-171638899:+
Coord C1 exon
chr2:171634154-171634190
Coord A exon
chr2:171636303-171636398
Coord C2 exon
chr2:171638751-171638899
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTTTATACCTCAAGTAA
3' ss Score
2.43
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAAAAGTGATGATTGAATCAAACGAAGCAATGTCAGA
Seq A exon
TAAATGCCTCTTTGGACGCAGACCAAGATTGACAAGCAAACTTAATACCTCACCAACACAGGTCTCTGTAAATGTAGCTAAAACATTCTCAGAAAA
Seq C2 exon
GAAGGAAGTCCCTTCTAAGAATATTGCAAATAAAGTCTCTTTACAGACTACTGAAAATAGAGTATCTTCAAGGAGTATCGAAAGTAAAGATATCTTAACAAATCTACAGTCTGACCTATTGTCATCTTCCTGCTTAAAAGAAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204334-'7-9,'7-8,8-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.486 C2=0.549
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGATTGAATCAAACGAAGCA
R:
AAGCAGGAAGATGACAATAGGT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)