RnoEX6017355 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56816093-56824276:+
Coord C1 exon
chr3:56816093-56816129
Coord A exon
chr3:56820117-56820209
Coord C2 exon
chr3:56824143-56824276
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTTCTACTTCACTTTTAAGGAA
3' ss Score
8.59
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGAAACTGATGAGCGGCTCCAATAAAGAAAAGCCACA
Seq A exon
GAAATCCTCCTTTGGACGGAGACCAAGATTGTCCAGCAAGCTTTGTACTTCTCCAACACAGATCCCGGGTGGAGCTACTGTGTTCTCAGCAAG
Seq C2 exon
AAAAGAAACCTCTTCAAAGAAGATTGAAGATAAAGTCTCTTTGAAAAGCAGTGAAAACAGACCTTCTTCAAGGAGTATTGAAACAAACCGGCAGTTCGACCTCTGGTCATCTTCCTTCCTAAAAGAAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-'7-7,'7-6,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.922 C2=0.565
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGATGAGCGGCTCCAA
R:
TGAGCTTTCTTTTAGGAAGGAAGATG
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]