MmuEX0001814 @ mm10
Exon Skipping
Gene
ENSMUSG00000075302 | Erich2
Description
glutamate rich 2 [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70523331-70531824:+
Coord C1 exon
chr2:70523331-70523367
Coord A exon
chr2:70527433-70527525
Coord C2 exon
chr2:70531676-70531824
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTACTTCACTTAAGCAA
3' ss Score
2.65
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AAAAACTGATGAGCGGCGCCAATAAAGAAAAGTCACA
Seq A exon
CAAAGCCCCCTTTGGACGCAGGCCGAGATTATCAAACAAGCTTTATACTTCTCCAGCGCAGATCCCGGGTGGAGCTAATGCATTCTCAGCAAA
Seq C2 exon
AAAAGAAGCCTCTTCAAAGAAGAGCGAAGATAAAGTCTCTTTTAAAAGTATTGAAAACAGACCATCCTCAAGGAGTACTGAAAATAAAGATGTCTTAACAAACCAGCAGTCCGGCCTGTGGTCATCTTCCTTCCTAAAAGAAAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.953 C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGAGCGGCGCCAATAA
R:
GGAAGGAAGATGACCACAGGC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types