HsaEX0000931 @ hg38
Exon Skipping
Gene
ENSG00000204334 | ERICH2
Description
glutamate rich 2 [Source:HGNC Symbol;Acc:HGNC:44395]
Coordinates
chr2:170777580-170782341:+
Coord C1 exon
chr2:170777580-170777680
Coord A exon
chr2:170779793-170779888
Coord C2 exon
chr2:170782241-170782341
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTTTATACCTCAAGTAA
3' ss Score
2.43
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TTAGAAGTGTATGTCAGGGACATCAGTGTTAATAAAATACTGAGGGTATTTTTTTCTCTTTCAGAAAAAGTGATGATTGAATCAAACGAAGCAATGTCAGA
Seq A exon
TAAATGCCTCTTTGGACGCAGACCAAGATTGACAAGCAAACTTAATACCTCACCAACACAGGTCTCTGTAAATGTAGCTAAAACATTCTCAGAAAA
Seq C2 exon
GAAGGAAGTCCCTTCTAAGAATATTGCAAATAAAGTCTCTTTACAGACTACTGAAAATAGAGTATCTTCAAGGAGTATCGAAAGTAAAGATATCTTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204334-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGGGACATCAGTGTTAAT
R:
ACTTTCGATACTCCTTGAAGATACT
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development