HsaEX0002096 @ hg19
Exon Skipping
Gene
ENSG00000166743 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:18049]
Coordinates
chr16:20638511-20673195:-
Coord C1 exon
chr16:20673116-20673195
Coord A exon
chr16:20648061-20648162
Coord C2 exon
chr16:20638511-20638638
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCACAGGCCTCTTGCTACAGGTC
3' ss Score
6.39
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACATTGTTGAAATACCCCATTAACCACTTTTGGGGGGTATCATCTATATATCGAATGATTCTGCAGCAGGATTTCACCAG
Seq A exon
GTCATTGATGACAAGGGCAGCATCCTGCCACCTAACACAGAAGGAAACATTGGCATCAGAATCAAACCTGTCAGGCCTGTGAGCCTCTTCATGTGCTATGAG
Seq C2 exon
GGTGACCCAGAGAAGACAGCTAAAGTGGAATGTGGGGACTTCTACAACACTGGGGACAGAGGTAAGATGGATGAAGAGGGCTACATTTGTTTCCTGGGGAGGAGTGATGACATCATTAATGCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166743_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=0.087
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(25.7=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(0.1=0.0),PF0050123=AMP-binding=PD(91.3=95.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAAATACCCCATTAACCACT
R:
CCAGAGGCATTAATGATGTCATCAC
Band lengths:
204-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)