MmuEX6013585 @ mm9
Exon Skipping
Gene
ENSMUSG00000033533 | Acsm1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:MGI Symbol;Acc:MGI:2152200]
Coordinates
chr7:126797846-126801941:+
Coord C1 exon
chr7:126797846-126797969
Coord A exon
chr7:126799496-126799597
Coord C2 exon
chr7:126801814-126801941
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCACAGGCTTCTTATTCCAGATC
3' ss Score
6.27
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
CCTCAGGTTCCCCACCCTTGAGCATTGCACTACTGGTGGGGAGAGCCTGCTGCCTGAGGAGTATGAGCAGTGGAAGCAAAGGACAGGTCTTTCCATCCACGAGGTCTATGGACAGTCAGAAACG
Seq A exon
ATCATCGATGAAAAGGGCAACATCCTCCCACCCAACACTGAAGGATACATTGGCATCAGGATCAAGCCCACCAGGCCTCTAGGCCTCTTCATGGAATATGAG
Seq C2 exon
AATAGCCCAGAGAGCACATCTGAAGTGGAGTGTGGGGACTTTTACAATAGTGGGGATAGAGCGACCATTGATGAAGAGGGCTACATCTGGTTCTTGGGAAGGGGCGATGATGTCATCAATGCTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033533-'10-12,'10-11,12-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.127 C2=0.209
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.1=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCCACCCTTGAGCATTG
R:
CCGGAAGCATTGATGACATCA
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: