HsaEX0002589 @ hg38
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133536563-133538424:+
Coord C1 exon
chr9:133536563-133536802
Coord A exon
chr9:133537405-133537547
Coord C2 exon
chr9:133538349-133538424
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGGGGGTCCCTCTCACCCAGGAC
3' ss Score
6.71
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
Exon sequences
Seq C1 exon
GGTCTGCCAGACAACCACGACCAACTAGTCCCAGATAACCTTGAGGCCTGGGCACTGGCTGGGCCCCGAGGGCTCTTCCCAAAGCGTACCCTGGTCATCTGGAAGAGGATCGGAGCTGGCCTGGTGGTGACAGTGGCCTTGCTTCCTAGGATGGATGGCAGATGGCAATGTTCCTGCTGGGCCTGGTTCCTGCTGGTTCTGGCAGTTGTAGCTGGGGACACAGTGTCAACCGGGTCCACG
Seq A exon
GACAACAGCCCAACATCCAATAGCCTGGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGTGGACCAAGTGGACGGCGTGTTCCCGCAGTTGCGGGGGTGGGGTGACATCCCAGGAGCGGCACTGCCTGCAGCAGAG
Seq C2 exon
GAGGAAGTCCGTCCCGGGCCCCGGGAACAGGACCTGCACGGGCACGTCCAAGCGGTACCAGCTCTGCAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.260 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(49.1=56.2)
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCCAAAGCGTACCCTG
R:
GCACTCTGCAGAGCTGGTAC
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development