MmuEX6099840 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27081704-27083275:+
Coord C1 exon
chr2:27081704-27081794
Coord A exon
chr2:27082382-27082524
Coord C2 exon
chr2:27083200-27083275
Length
143 bp
Sequences
Splice sites
3' ss Seq
GGGGGGTGCTTTTTACCCAGGAC
3' ss Score
4.54
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGGATGGCAGACGGCAGCATCCACACTGGGCTTGGTCCTTGCTGGCTGTAGCAGTTGTGGCTGGGGGTGCGGCACCTACGGAGGCTTCC
Seq A exon
GACAACAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGACACCACTGCCTACTGGTGGGGGGAGTGGACCAAGTGGACAGCATGTTCCCGCAGTTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTTCAACAGAG
Seq C2 exon
GAGGAAGTCTGTTCCAGGCACAGGGAACAGGACCTGTGTGGGCACGTCCAAACGGTACCAGCTCTGCAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'4-5,'4-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.292 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(49.1=56.2)
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCAGCATCCACACTG
R:
GCACTCTGCAGAGCTGGTAC
Band lengths:
154-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types