RnoEX6016078 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5626402-5627978:+
Coord C1 exon
chr3:5626402-5626492
Coord A exon
chr3:5627099-5627241
Coord C2 exon
chr3:5627903-5627978
Length
143 bp
Sequences
Splice sites
3' ss Seq
GGTGGGGACTTTTCACCCAGGAC
3' ss Score
3.12
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGGACAGCGGATGGCAACGCTCACGCTGGGCTTGGTCTTTGCTGGCCATGGCAGTTGTGGCCGGGGGTGCGGCATCTACCGAGGCTTCG
Seq A exon
GACAATAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGATGCCACTGCCTACTGGTGGGGAGAGTGGACCAAGTGGACTGCGTGTTCCCGCAGCTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTGCAACAGAG
Seq C2 exon
GAGGAAGTCTGTTCCAGGTGCAGGGAACAGGACCTGTGTGGGCACATCCAAACGGTACCAGCTCTGCAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.208 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(49.1=56.2)
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCAACGCTCACGCT
R:
GCACTCTGCAGAGCTGGTAC
Band lengths:
154-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]