GgaEX6015342 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6972901-6974431:+
Coord C1 exon
chr17:6972901-6973023
Coord A exon
chr17:6973642-6973784
Coord C2 exon
chr17:6974356-6974431
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCCATCCCTGGTGTTTGCAGGAC
3' ss Score
8.97
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
TTGCTCCGTAGGATGAAGATGTTCAGGTGGAGGTGGAGCAGCATCTCTGTCAGTGTGCGGTCCCGGCTGAGGGCTGCCCTGGCCCTTCTTGTCGTGGGCAATGTGGCCTTTGTGATAGCTCAG
Seq A exon
GACCTGCCTCAGACCTCCAACAGCCTGGAGGAGGGTGCAGATGTCACTGCATACTGGTGGGGTGAGTGGACCAAGTGGACGGCATGCACGAGGAGCTGTGGTGGAGGTGTGAAGTCCCAGGAGAGGCACTGCCTGCGGCAGAG
Seq C2 exon
ACGAAAGTCGGTGAGTGGGCTGGCTAATAAAACTTGCACTGGAACATCCAAAAGATATCAGCTCTGCAGAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(49.1=56.2)
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAAGATGTTCAGGTGGAGG
R:
TGTACTCTGCAGAGCTGATATCT
Band lengths:
188-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]