DreEX0068155 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20929720-20941343:-
Coord C1 exon
chr2:20941197-20941343
Coord A exon
chr2:20936078-20936220
Coord C2 exon
chr2:20929720-20929795
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTGTCTCTGCCAGGAC
3' ss Score
11.01
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
CTGTGGTGAAGATCAGGGGGGCGAGGTCTGCTTGTTCTCAAATGAACCATGTACTGTCTCTGGACGGCAAGAGTCGGACACACTCTACTACCATACTTTCTCATACACGTATGGATTATTAATACAGCAGCAGGTGTAAATGTTAAG
Seq A exon
GACAGCAGTGAGGGGAGGGAGGATTTGCAGAGGCATCCAGACGAGGTAGCGCAGTGGTGGGGTGAATGGAGCAGCTGGTCCACCTGTTCCCGTACCTGTGGAGGAGGAGTGCGCTCTCAGGAACGTCACTGTCTGCAACAGAG
Seq C2 exon
ACTGACGTCGACCCAAAACATCAACAGTTCTTTCTGCATTGGACCTTCAAAACAGTATCAGCTGTGCACAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487_MULTIEX1-1/9=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(49.1=56.2)
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGTGAAGATCAGGGGG
R:
TGATTTGTGCACAGCTGATACTG
Band lengths:
222-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]