HsaEX0006052 @ hg38
Exon Skipping
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28633]
Coordinates
chr9:137612896-137613769:+
Coord C1 exon
chr9:137612896-137613006
Coord A exon
chr9:137613460-137613510
Coord C2 exon
chr9:137613615-137613769
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCCTGTCTCTGCAGGGA
3' ss Score
12.66
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CCATCCGGGTGACCTGCATAGGTTCCTGCGGGGTCTCCAACAAGGCTAATGACACAGCGTGGGTAGTGGAGGAGGGTTACTTCAACAGTTCCCTGTCGCTGGCAGACAAGG
Seq A exon
GGAGCCTGCCCGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
Seq C2 exon
CCACTGCACCCACGTCCTTTGAGGGTCCTTTCGGGAAGATCGTGCACCAGGTGAGGGCCGCCATCCACACGCCACGGTTTTCCAAGGATCACAAGTGCAGCCTCGTGTTCTATATCTTGAGCCCCTTGAACCTGAACAGCATCCCAGACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(58.0=55.3)
A:
PF0033924=Arrestin_N=FE(12.8=100)
C2:
PF0033924=Arrestin_N=PD(33.8=86.5),PF0275217=Arrestin_C=PU(3.6=7.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTAGTGGAGGAGGGTTAC
R:
TGATCCTTGGAAAACCGTGGC
Band lengths:
143-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development