RnoEX6015773 @ rn6
Exon Skipping
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2131414-2132396:-
Coord C1 exon
chr3:2132286-2132396
Coord A exon
chr3:2131657-2131707
Coord C2 exon
chr3:2131414-2131568
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTCTTGTCTCTGTAGGAA
3' ss Score
12.61
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCAACAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTATCACTGGCTGACAAGG
Seq A exon
GAAGTCTGCCACCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
Seq C2 exon
CCACAGCACCCACATCTTTCGAGGGCCCCTTTGGGAAGATTGTGCACCAGGTGAGGGCGTCCATCGACACTCCACGTTTTTCCAAGGATCACAAATGCAGCCTCGTGTTCTACATCCTGAGCCCCTTGAACCTGAACAGCATCCCAGATATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622-'7-7,'7-5,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
PF0033924=Arrestin_N=FE(12.8=100)
C2:
PF0033924=Arrestin_N=PD(33.8=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCTCCCTATCACTGGCT
R:
CGAGGCTGCATTTGTGATCCT
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]