BtaEX0004432 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105543199-105543887:-
Coord C1 exon
chr11:105543777-105543887
Coord A exon
chr11:105543445-105543495
Coord C2 exon
chr11:105543199-105543353
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCTCGTGTCCTCAGGGA
3' ss Score
11.33
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CCATCCGCGTGACCTGCACGGGGTCCTGCAGGGTCTCCAACAAGGCCAACGACTCGGCCTGGGTGGTGGAGGAGAGCTACTTCAACAGTGCCCTGTCTCTGGCCGACAAGG
Seq A exon
GGAGCCTGCCTGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
Seq C2 exon
CCACGGCTCCCACGTCCTTCGAGGGCCCTTTTGGGAAGATTGTACACCAGGTACGGGCCACCATCGACACACCACGTTTTTCCAAGGATCACCAGTGCAGCCGTGTCTTCTACATCTTGAGCCCCCTGAACCTGAACAGCATCCCAGACATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147-'18-7,'18-5,19-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
PF0033924=Arrestin_N=FE(12.8=100)
C2:
PF0033924=Arrestin_N=PD(33.8=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGGAGGAGAGCTACTT
R:
TGGAAAAACGTGGTGTGTCGA
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development