GgaEX0012390 @ galGal3
Exon Skipping
Gene
ENSGALG00000008475 | ARRDC1
Description
NA
Coordinates
chr17:2374508-2384282:+
Coord C1 exon
chr17:2374508-2374618
Coord A exon
chr17:2383585-2383635
Coord C2 exon
chr17:2384128-2384282
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTACTCTTATTTCCCACAGGAG
3' ss Score
8.93
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCATCAAGGTGAGCTGCGTTGGATTCTGTGGGGTGTCAAACAAGATCAATGACACTGCCTGGACCGTGGAGGAGCAGTACTTCAACAGCACGCTATCTTTGGCAGACAAAG
Seq A exon
GAGTCCTTTCAGCTGGGGAGCACAACTTTTCCTTCCAGTTCCTGCTGCCAG
Seq C2 exon
CCTCTGCTCCTACATCATTTGAAGGTCCTTTTGGCAAGGTTCTCCATCAGGTGAAGGCTGTGATAGACACACCTCGCTTCTCCAAGGACTACAAGTGCAACAAGATCTTTTATGTTCTCTGCCCTCTCAACTTGAATGACATCCTTGATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
PF0033924=Arrestin_N=FE(12.8=100)
C2:
PF0033924=Arrestin_N=PD(33.8=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGATTCTGTGGGGTGTC
R:
CACCTGATGGAGAACCTTGCC
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event