HsaEX0010087 @ hg19
Exon Skipping
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:29591]
Coordinates
chr1:172425555-172434503:+
Coord C1 exon
chr1:172425555-172425629
Coord A exon
chr1:172431318-172431385
Coord C2 exon
chr1:172434439-172434503
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATGAGACTTTCTTCTTGAGGTA
3' ss Score
-2.29
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GCCAGGAGGAACCAGTGTGACTCCATGCTGCTCAGAAACCAACAGCTGTGCTCCACATGTCAAGAAATGAAAATG
Seq A exon
GTACAACCAAGAACAATGAAAATCCCAGATGATCCAAAAGCATCCTTTGAGAATTGTATGAGTTATAG
Seq C2 exon
AATGAGTCTTCATCAACCCAAATTCCAGACTACACCTGAGCCTTTCCATGATGACATCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.453 C2=0.594
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(14.5=100)
A:
PF150811=DUF4548=FE(13.3=100)
C2:
PF150811=DUF4548=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGAACCAGTGTGACT
R:
TGGGATGTCATCATGGAAAGGC
Band lengths:
135-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)