HsaEX0010087 @ hg38
Exon Skipping
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:29591]
Coordinates
chr1:172456415-172465363:+
Coord C1 exon
chr1:172456415-172456489
Coord A exon
chr1:172462178-172462245
Coord C2 exon
chr1:172465299-172465363
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATGAGACTTTCTTCTTGAGGTA
3' ss Score
-2.29
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GCCAGGAGGAACCAGTGTGACTCCATGCTGCTCAGAAACCAACAGCTGTGCTCCACATGTCAAGAAATGAAAATG
Seq A exon
GTACAACCAAGAACAATGAAAATCCCAGATGATCCAAAAGCATCCTTTGAGAATTGTATGAGTTATAG
Seq C2 exon
AATGAGTCTTCATCAACCCAAATTCCAGACTACACCTGAGCCTTTCCATGATGACATCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.435 C2=0.522
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(14.4=100)
A:
PF150811=DUF4548=FE(13.2=100)
C2:
PF150811=DUF4548=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGAACCAGTGTGACT
R:
TGGGATGTCATCATGGAAAGGC
Band lengths:
135-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development