RnoEX6045049 @ rn6
Exon Skipping
Gene
ENSRNOG00000026523 | RGD1309106
Description
similar to hypothetical protein [Source:RGD Symbol;Acc:1309106]
Coordinates
chr13:79869532-79875825:-
Coord C1 exon
chr13:79875742-79875825
Coord A exon
chr13:79872340-79872407
Coord C2 exon
chr13:79869532-79869590
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATCGGGCTTTCTTTCTCAGTTA
3' ss Score
7.38
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GCTAGAAAGAACGAGCATGAAAACCTGTTACCCAGAAACAAGCAGCTGTGCTCCACATGTCGAGGATATCAAGAAATGAAAACG
Seq A exon
TTACAGCCAAAAATTTTCAAAATACCTGACCATCGGGAACCATCCCCCCAGAATTCTGTGAATCACGG
Seq C2 exon
CGAGGTGAGCCTTCATTCGCAAGAGCAGCAGTTACATGCCTGCAATGATATTCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026523-'18-14,'18-11,19-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.783 C2=0.238
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(16.4=100)
A:
PF150811=DUF4548=FE(13.3=100)
C2:
PF150811=DUF4548=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAAAGAACGAGCATGAAAACC
R:
CTGTTGGAATATCATTGCAGGCA
Band lengths:
143-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]